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Anyone have any ideas?

Example: BartPE is on R Drive and the infected OS drive is D:

Which registry will Spybot look at?

I have it on the boot CD but it scans the registry of BartPE and not the "infected" machines registry.

Are you saying that I should copy the folder to the infected drive and then run it from there?

I have CCleaner on two BootCD's that I got from a friend for virus removal.

Unfortunately, Spybot only scans the registry hive for the host registry. Is there a way to load a remote hive? How...