Well I started poking around and found out that I could upgrade to the 2011 Kaspersky which I did. Ran a scan (which took over 12 hours) and woke up this morning to find that the Quickbooks ones are still showing but Kaspersky deleted the Common Files one all by itself. I am no longer getting the prompts from Kaspersky that I have something bad either. Another glorious thing is that my computer is running normal again. I think that Kaspersky 2010 was the culprit the whole time

I am thinking of uninstalling the Quickbooks just to be safe.

I think I am clean (well sort of) but want to hear the okay from you.