If you are moving everything are you just going to format the drive and reinstall Windows? If that is what I am understanding than you should be fine to move over personal files like music, pictures, documents and the like. The infection was all over your system so I would be careful with what you transfer other than those I mentioned. If it were me, I would save my music, pictures and documents and that is it...just start over. It is actually a lot faster and you will have the peace of mind that the infection is gone.