It shows 1387675 for me.

In Spybot, advanced mode, settings tab, file sets, are all the boxes checked?
If not that might explain it. Unchecked ones are not included in the scan.

Also in advanced mode, settings tab, settings, check all the expert settings. Then in the search and destroy window click on the arrow on the file sets button and check that select all available checks has a check mark against it, if not click on it to select it.